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recombination detection program (rdp)  (CH Instruments)

 
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    CH Instruments recombination detection program (rdp)
    Recombination Detection Program (Rdp), supplied by CH Instruments, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/recombination+detection+program+rdp/recombination+detection+program++rdp+/pmc05510628-216-30-37
    Average 90 stars, based on 1 article reviews
    recombination detection program (rdp) - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Genetic diversity and evidence of recombination in the coat protein gene of Onion yellow dwarf virus
    Article Snippet: Abstract The coat protein (CP) coding region of seven Polish Onion yellow dwarf virus (OYDV) isolates was sequenced.. It was 771 bp long in all the seven isolates, and encoded a protein of 257 amino acids.. Comparative nucleotide sequence analysis revealed diversity of 3 % among the Polish isolates and of 20 % among all garlic isolates worldwide.



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    Recombination trend analysis of EV-G Epidemic Strains. Recombination events among the twenty-eight EV-G strains (see <xref ref-type=Figure 2 ) were analyzed using RDP software. Seventeen high-confidence events, consistently identified by all seven algorithms (RDP, GENECONV, BootScan, MaxChi, Chimaera, SiScan, and 3Seq), were selected for further characterization. Their recombination maps are displayed below, aligned with a reference EVG-SH-2024 ( PV984503 ) genome schematic for comparative analysis. " width="100%" height="100%">

    Journal: Frontiers in Cellular and Infection Microbiology

    Article Title: Isolation and characterization of an enterovirus G strain causing diarrhea and gut microbiota dysbiosis in piglets

    doi: 10.3389/fcimb.2025.1699507

    Figure Lengend Snippet: Recombination trend analysis of EV-G Epidemic Strains. Recombination events among the twenty-eight EV-G strains (see Figure 2 ) were analyzed using RDP software. Seventeen high-confidence events, consistently identified by all seven algorithms (RDP, GENECONV, BootScan, MaxChi, Chimaera, SiScan, and 3Seq), were selected for further characterization. Their recombination maps are displayed below, aligned with a reference EVG-SH-2024 ( PV984503 ) genome schematic for comparative analysis.

    Article Snippet: Recombination detection program (RDP) analysis of the full-length EVG-SH-2024 genome, together with other EV-G sequences, indicated close relatedness to strain 13-03212/United States/2014 ( KF985175 ) in the genomic region spanning nt 1, 318–3, 830, as determined by SimPlot/SIScan analysis (P ≤ 7.468 × 10 -30 ) ( ).

    Techniques: Software

    Genetic recombination events of GNU-2353 and GNU-2377 detected by RDP4 software.

    Journal: Transboundary and Emerging Diseases

    Article Title: Comparative Genomic and Biological Investigation of NADC30- and NADC34-Like PRRSV Strains Isolated in South Korea

    doi: 10.1155/tbed/9015349

    Figure Lengend Snippet: Genetic recombination events of GNU-2353 and GNU-2377 detected by RDP4 software.

    Article Snippet: Potential recombination events were analyzed using recombination detection program (RDP), SimPlot, and phylogeny, as described previously [ ].

    Techniques: Software